Publications

(Co-)First author and (co-)corresponding author papers

  1. Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Alvarez-Jarreta et al.
    “Guiding the choice of informatics software and tools for lipidomics research applications.”
    Nature methods 20, no. 2 (2023): 193-204.
    DOI: 10.1038/s41592-022-01710-0
  1. Zhixu Ni, Georgia Angelidou, Ralf Hoffmann, and Maria Fedorova.
    “LPPtiger software for lipidome-specific prediction and identification of oxidized phospholipids from LC-MS datasets.”
    Scientific reports 7, no. 1 (2017): 15138.
    DOI: 10.1038/s41598-017-15363-z
  1. Zhixu Ni, Georgia Angelidou, Mike Lange, Ralf Hoffmann, and Maria Fedorova.
    “LipidHunter identifies phospholipids by high-throughput processing of LC-MS and shotgun lipidomics datasets.”
    Analytical Chemistry 89, no. 17 (2017): 8800-8807.
    DOI: 10.1021/acs.analchem.7b01126
  1. Zhixu Ni, Laura Goracci, Gabriele Cruciani, and Maria Fedorova.
    “Computational solutions in redox lipidomics–Current strategies and future perspectives.”
    Free Radical Biology and Medicine 144 (2019): 110-123.
    DOI: 10.1016/j.freeradbiomed.2019.04.02
  1. Tito Damiani,Stefano Bonciarelli, Gerhard G. Thallinger*, Nikolai Koehler; Christoph A. Krettler, Arif K. Salihoğlu, Ansgar Korf, Josch K. Pauling, Tomáš Pluskal, Zhixu Ni*, Laura Goracci*. (Co-corresponding author)
    “Software and computational tools for LC-MS-based epilipidomics: Challenges and solutions.”
    Analytical chemistry 95, (2023): 287-303.
    DOI: 10.1021/acs.analchem.2c04406
  1. Zhixu Ni, Bebiana C. Sousa, Simone Colombo, Catarina B. Afonso, Tania Melo, Andrew R. Pitt, Corinne M. Spickett et al.(Co-first author)
    “Evaluation of air oxidized PAPC: A multi laboratory study by LC-MS/MS.”
    Free Radical Biology and Medicine 144 (2019): 156-166.
    DOI: 10.1016/j.freeradbiomed.2019.06.013
  1. Zhixu Ni, Georgia Angelidou, Giulia Coliva, Mike Lange, and Maria Fedorova.
    “Analytical strategies to uncover the diversity of lipid peroxidation products and their biological effects.”
    Free Radical Biology and Medicine 124 (2018): 560-561.
    DOI: 10.1016/j.freeradbiomed.2018.05.018
  1. Zhixu Ni, Ivana Milic, and Maria Fedorova.
    “Identification of carbonylated lipids from different phospholipid classes by shotgun and LC-MS lipidomics.”
    Analytical and bioanalytical chemistry 407 (2015): 5161-5173.
    DOI: 10.1007/s00216-015-8536-2
  1. Zhixu Ni, and Maria Fedorova. 2017.
    “Oxidized (Phospho)Lipids.”
    Encyclopedia of Lipidomics, edited by Markus R. Wenk, 1–6. Dordrecht: Springer Netherlands. (Book Chapter).
    DOI: 10.1007/978-94-007-7864-1_183-1